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ACADEMIC EDUCATION

M.Sc. | Genetics Biology | University of Kharazmi, Tehran, Iran 2013-2016

Thesis Title: “Bioinformatics evaluation of gene expression profile in testis tissue and

TSSK6 expression measurement in the testis of azoospermic men.”

B.Sc. | Biology | University of Payam Noor, Qom, Iran 2006-2012

TECHNICAL SKILLS

● Programming Languages: R (limma, affy, oligo, ggplot2, sva, DESeq2, plyr, pheatmap, VennDiagram, gridExtra, GGally, pheatmap, gplots, Biobase, ...), Python (Numpy, SciPy, Matplotlib, Pandas)
● Real time-PCR: RNA Extraction, cDNA Synthesis, PCR, Electrophoresis
● RNA-Seq and DNA-Seq Analysis: hisat2, STAR, HTSeq-count, fastqc, Trimmomatic, IGV, BWA, Bowtie, SAMtools, limma, CLC Genomics, UseGalaxy.
● Bioinformatics Databases: DAVID, Kegg, NCBI, Broad, Ensembl, Gene Ontology, Pfam, PlantTFDB, Genomatix, ArrayExpress, GeneCards, Panther Pathway, OMIM, Biodbnet
● Bioinformatics Tools: GSEA, GenePattern, Connectivity Map, ChemBank, CLC Bio, MEGA4, PlantTFDB, Digital Differential Display (DDD), GENEVESTIGATOR
● Pathway Analysis Tools: Cytoscape, Pathway Studio, String-db, GeneMania, BioTapestry
● MicroRNA Analysis Software: TargetScan, miRBase, psRNATarget
● Primer Design: Perl Primer, Gene Runner, Primer3, Primer Blast, OligoAnalyzer, DNASTAR
● Other: Microsoft Excel, Power Point, Linux

PUBLICATIONS

Hozhabri H, Ghasemi Dehkohneh RS, Razavi SM*, Razavi M, Salarian F, Rasouli A, Azami J, Ghasemi Shiran M, Kardan Z, Farrokhzad N, Mikaeili Namini A, Salari Ali*. Comparative analysis of protein-protein interaction networks in metastatic breast cancer. PloS one. 2022 Jan 19;17(1):e0260584. DOI: https://doi.org/10.1371/journal.pone.0260584

Razavi SM, Salari A, Jamalpoor Z. Comparative evaluation of pathways and gene expression profile similarity in differentiated stem cells versus normal adult cells in seven human tissues. Gene Reports. 2021 Jun 8:101242.

DOI: https://doi.org/10.1016/j.genrep.2021.101242

Hozhabri H, Lashkari A, Razavi SM, Mohammadian A. Integration of gene expression data identifies key genes and pathways in colorectal cancer. Medical Oncology. 2021 Jan;38(1):1-4.

DOI: https://doi.org/10.1007/s12032-020-01448-9

Razavi SM, Sabbaghian M, Jalili M, Divsalar A, Wolkenhauer O, Salehzadeh-Yazdi A. Comprehensive functional enrichment analysis of male infertility. Scientific reports. 2017 Nov 17;7(1):1-4.

DOI: https://doi.org/10.1038/s41598-017-16005-0

Talkhabi M, Razavi SM, Salari A. Global transcriptomic analysis of induced cardiomyocytes predicts novel regulators for direct cardiac reprogramming. Journal of cell communication and signaling. 2017 Jun;11(2):193-204.

DOI: https://doi.org/10.1007/s12079-017-0387-5

Pourabed E, Golmohamadi FG, Monfared PS, Razavi SM, Shobbar ZS. Basic leucine zipper family in barley: genome-wide characterization of members and expression analysis. Molecular biotechnology. 2015 Jan 1;57(1):12-26.

DOI: https://doi.org/10.1007/s12033-014-9797-2

In silico characterization and expression analysis of SnRK2 family in barley

Panahi Y, Shobbar ZS*, Pourabed E, Ghane F, Razavi SM, Iranian Journal of Crop Biotechnology, 2015

(http://cropbiotech.journals.pnu.ac.ir/?_action=articleInfo&article=2702)

Designing prediction models to determine the structure of Stearoyl-acyl carrier protein desaturase 1

Salari A, Razavi SM, Ebrahimi M*, Qom Univ Med Sci J, 2015

(http://journal.muq.ac.ir/browse.php?a_id=231&sid=1&slc_lang=en)

Book: “Omega Clan and applications in the human body”, Yazdian M R, Salari A, Mousavi H, Mousavi AH, Razavi SM. (2012)

RESEARCH INTERESTS
● Evolutionary genomics and transcriptomics
● Multi-Omics data integration and systems biology